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Drosophila melanogaster (6-4) photolyase H369M mutant bound to ds DNA with a T-T (6-4) photolesion
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.6 293 15-25% PEG1500, 0.1 M MIB buffer, pH 8.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.43 49.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.41 α = 90 b = 89.04 β = 90 c = 90.16 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MARMOSAIC 225 mm CCD Dynamically bendable mirror 2008-02-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.97895 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 20 96 0.086 15.1 4 11606 11606 75.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.2 3.3 90.8 0.327 4.8 933
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 3.2 19.96 11396 11396 604 99.83 0.23267 0.23267 0.23002 0.2242 0.28166 0.2647 RANDOM 44.575
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.65 0.55 1.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.541 r_dihedral_angle_3_deg 14.856 r_dihedral_angle_4_deg 12.448 r_dihedral_angle_1_deg 4.795 r_angle_refined_deg 0.956 r_nbtor_refined 0.298 r_nbd_refined 0.173 r_xyhbond_nbd_refined 0.107 r_symmetry_hbond_refined 0.102 r_symmetry_vdw_refined 0.097
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.541 r_dihedral_angle_3_deg 14.856 r_dihedral_angle_4_deg 12.448 r_dihedral_angle_1_deg 4.795 r_angle_refined_deg 0.956 r_nbtor_refined 0.298 r_nbd_refined 0.173 r_xyhbond_nbd_refined 0.107 r_symmetry_hbond_refined 0.102 r_symmetry_vdw_refined 0.097 r_chiral_restr 0.061 r_bond_refined_d 0.006 r_gen_planes_refined 0.001 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4114 Nucleic Acid Atoms 609 Solvent Atoms 13 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data reduction XSCALE data scaling REFMAC phasing