☰ Navigation Tabs
Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesion and F0 cofactor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.6 293 15-25% PEG1500, 0.1 M MIB buffer, pH 8.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.36 47.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.59 α = 90 b = 91.07 β = 90 c = 88.26 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARMOSAIC 225 mm CCD Dynamically bendable mirror 2007-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.97925 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 40 97 0.082 15.2 5.2 39271 39271 27.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.15 93 0.362 5 4836
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.1 39.72 38376 38367 2050 99.83 0.16844 0.16844 0.1661 0.1769 0.21254 0.2219 RANDOM 31.791
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 -0.28 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.229 r_dihedral_angle_4_deg 16.58 r_dihedral_angle_3_deg 14.007 r_dihedral_angle_1_deg 12.37 r_scangle_it 2.134 r_scbond_it 1.395 r_angle_refined_deg 1.393 r_mcangle_it 0.972 r_angle_other_deg 0.88 r_mcbond_it 0.707
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.229 r_dihedral_angle_4_deg 16.58 r_dihedral_angle_3_deg 14.007 r_dihedral_angle_1_deg 12.37 r_scangle_it 2.134 r_scbond_it 1.395 r_angle_refined_deg 1.393 r_mcangle_it 0.972 r_angle_other_deg 0.88 r_mcbond_it 0.707 r_symmetry_vdw_other 0.203 r_nbd_refined 0.198 r_nbtor_refined 0.19 r_nbd_other 0.185 r_xyhbond_nbd_refined 0.142 r_mcbond_other 0.129 r_symmetry_hbond_refined 0.128 r_symmetry_vdw_refined 0.123 r_chiral_restr 0.098 r_nbtor_other 0.083 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4263 Nucleic Acid Atoms 609 Solvent Atoms 468 Heterogen Atoms 95
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data reduction XSCALE data scaling REFMAC phasing