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Crystal structure of the full length IpaH3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 2M NaCl, 0.1M Bis-Tris pH5.5, 2.5% Polyacrylic acid 5100 sodium salt, 0.1 M Sodium Nitrate, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.9 68.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 154.19 α = 90 b = 154.19 β = 90 c = 85.87 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD MAR CCD 165 mm 2008-02-28 M SINGLE WAVELENGTH 2 1 x-ray 95 CCD ADSC QUANTUM 270 2008-03-03 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BSRF BEAMLINE 3W1A 0.9800 BSRF 3W1A 2 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0000 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.8 51.37 98.7 0.071 0.074 25.3 11 26107 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.8 2.95 99.6 0.362 0.38 5.5 11.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.8 48.76 26028 24588 1318 99.54 0.2519 0.25057 0.2744 0.27654 0.2984 RANDOM 68.787
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.44 -1.44 2.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.393 r_dihedral_angle_3_deg 19.601 r_dihedral_angle_4_deg 18.178 r_dihedral_angle_1_deg 5.198 r_scangle_it 1.579 r_angle_refined_deg 1.16 r_scbond_it 0.952 r_mcangle_it 0.631 r_mcbond_it 0.388 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.393 r_dihedral_angle_3_deg 19.601 r_dihedral_angle_4_deg 18.178 r_dihedral_angle_1_deg 5.198 r_scangle_it 1.579 r_angle_refined_deg 1.16 r_scbond_it 0.952 r_mcangle_it 0.631 r_mcbond_it 0.388 r_nbtor_refined 0.305 r_nbd_refined 0.199 r_symmetry_hbond_refined 0.176 r_symmetry_vdw_refined 0.154 r_xyhbond_nbd_refined 0.128 r_chiral_restr 0.08 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3702 Nucleic Acid Atoms Solvent Atoms 39 Heterogen Atoms
Software Software Software Name Purpose SCALA data processing SOLVE phasing CNS refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction SCALA data scaling REFMAC refinement