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Crystal structure of a putative phosphoheptose isomerase (bh3325) from bacillus halodurans c-125 at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.33 293 NANODROP, 22.0% PEG 8000, 0.15M Magnesium acetate, 0.1M Sodium cacodylate pH 6.33, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.02 39.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.49 α = 90 b = 83.43 β = 90 c = 183.77 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97854 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 29.566 99.3 0.084 9.96 60439 -3 30.086
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 98.4 0.888 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 29.566 60380 3060 99.55 0.176 0.174 0.1784 0.221 0.2205 RANDOM 27.606
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.13 2.03 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.855 r_dihedral_angle_4_deg 18.775 r_dihedral_angle_3_deg 14.981 r_dihedral_angle_1_deg 6.14 r_scangle_it 2.032 r_mcangle_it 1.68 r_angle_refined_deg 1.53 r_scbond_it 1.507 r_angle_other_deg 1.487 r_mcbond_it 1.058
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.855 r_dihedral_angle_4_deg 18.775 r_dihedral_angle_3_deg 14.981 r_dihedral_angle_1_deg 6.14 r_scangle_it 2.032 r_mcangle_it 1.68 r_angle_refined_deg 1.53 r_scbond_it 1.507 r_angle_other_deg 1.487 r_mcbond_it 1.058 r_mcbond_other 0.328 r_chiral_restr 0.086 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7465 Nucleic Acid Atoms Solvent Atoms 414 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing autoSHARP phasing