☰ Navigation Tabs
Crystal Structure of the carboxy terminus of Homer3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3CVE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 7.6 297 0.1 M Tris, 4.2 M NaCl, 10% glycerol, pH 7.6, hanging drop, temperature 297K
Crystal Properties Matthews coefficient Solvent content 7.83 84.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 172.029 α = 90 b = 172.029 β = 90 c = 66.446 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Quantum-4 ADSC 2006-11-09 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C 0.9795 NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 50 99.4 0.078 14.5 7.2 25036
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.9 3 98.1 0.255 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3CVE 2.9 19.73 23703 1269 99.46 0.25391 0.2522 0.2495 0.28698 0.2825 RANDOM 57.781
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.01 0.02 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.723 r_dihedral_angle_3_deg 24.372 r_dihedral_angle_4_deg 21.713 r_dihedral_angle_1_deg 8.105 r_scangle_it 5.682 r_mcangle_it 3.345 r_scbond_it 3.326 r_mcbond_it 2.603 r_angle_refined_deg 2.312 r_symmetry_vdw_refined 0.352
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.723 r_dihedral_angle_3_deg 24.372 r_dihedral_angle_4_deg 21.713 r_dihedral_angle_1_deg 8.105 r_scangle_it 5.682 r_mcangle_it 3.345 r_scbond_it 3.326 r_mcbond_it 2.603 r_angle_refined_deg 2.312 r_symmetry_vdw_refined 0.352 r_nbtor_refined 0.317 r_nbd_refined 0.296 r_symmetry_hbond_refined 0.287 r_xyhbond_nbd_refined 0.187 r_chiral_restr 0.167 r_bond_refined_d 0.025 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2288 Nucleic Acid Atoms Solvent Atoms 18 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing