☰ Navigation Tabs
Crystal structure of the RRM-domain of the poly(A)-specific ribonuclease PARN bound to m7GTP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 2 M LiSO4, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.71 54.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.107 α = 90 b = 81.107 β = 90 c = 78.058 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2007-03-28 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2007-04-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 1.078 EMBL/DESY, HAMBURG BW7A 2 SYNCHROTRON BESSY BEAMLINE 14.2 0.9778, 0.97861, 0.91841 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.1 30 99.9 0.038 67.9 13.6 7925 7918 2 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.1 2.18 100 0.202 14.4 7.8 776
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 15 7466 7448 382 99.76 0.21124 0.21124 0.20959 0.24287 0.2475 RANDOM 45.363
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.83 -1.83 3.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.777 r_dihedral_angle_4_deg 15.778 r_dihedral_angle_3_deg 13.823 r_dihedral_angle_1_deg 6.203 r_scangle_it 3.207 r_scbond_it 2.007 r_mcangle_it 1.51 r_angle_refined_deg 1.287 r_mcbond_it 0.876 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.777 r_dihedral_angle_4_deg 15.778 r_dihedral_angle_3_deg 13.823 r_dihedral_angle_1_deg 6.203 r_scangle_it 3.207 r_scbond_it 2.007 r_mcangle_it 1.51 r_angle_refined_deg 1.287 r_mcbond_it 0.876 r_nbtor_refined 0.303 r_nbd_refined 0.195 r_symmetry_vdw_refined 0.154 r_xyhbond_nbd_refined 0.145 r_symmetry_hbond_refined 0.13 r_chiral_restr 0.097 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 602 Nucleic Acid Atoms Solvent Atoms 69 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement MAR345dtb data collection HKL-2000 data reduction HKL-2000 data scaling SHELXCD phasing SHELXE model building