☰ Navigation Tabs
Structure of a transient complex between Dha-kinase subunits DhaM and DhaL from Lactococcus lactis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 289 0.1 M Tris/HCl, 0.2 M LiSO4, 36 % PEG 4000, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.32 47.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.133 α = 90 b = 146.842 β = 90 c = 58.483 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-12-08 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 0.97885,0.97823,0.97240 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 147.442 99.8 0.047 22.2 4.9 37982 37982 1 -3 26.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.21 24.4 100 0.161 0.214 8.1 4.1 5440
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 66.23 37982 37952 1897 99.68 0.22168 0.22168 0.219 0.2324 0.263 0.2733 RANDOM 19.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.31 -2.51 -0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.488 r_dihedral_angle_4_deg 24.171 r_dihedral_angle_3_deg 14.556 r_dihedral_angle_1_deg 4.888 r_scangle_it 3.07 r_scbond_it 2.062 r_angle_refined_deg 1.215 r_mcangle_it 1.058 r_mcbond_it 0.812 r_nbtor_refined 0.293
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.488 r_dihedral_angle_4_deg 24.171 r_dihedral_angle_3_deg 14.556 r_dihedral_angle_1_deg 4.888 r_scangle_it 3.07 r_scbond_it 2.062 r_angle_refined_deg 1.215 r_mcangle_it 1.058 r_mcbond_it 0.812 r_nbtor_refined 0.293 r_xyhbond_nbd_refined 0.217 r_nbd_refined 0.204 r_symmetry_vdw_refined 0.182 r_symmetry_hbond_refined 0.153 r_metal_ion_refined 0.103 r_chiral_restr 0.078 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4726 Nucleic Acid Atoms Solvent Atoms 192 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling SHARP phasing