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Human SOD1 G85R Variant, Structure I
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AZV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 2.4 M sodium malonate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.49 50.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.472 α = 90 b = 116.808 β = 90 c = 147.764 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2004-11-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 1.37865 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 99.4 0.062 23.37 5.3 46284 46284 23
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 99.6 0.369 4.39 5.1 4606
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1AZV 1.95 50 43936 2347 99.29 0.18467 0.18266 0.1914 0.22326 0.2272 RANDOM 26.02
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 0.99 -1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.01 r_dihedral_angle_4_deg 18.812 r_dihedral_angle_3_deg 12.323 r_dihedral_angle_1_deg 5.882 r_scangle_it 2.344 r_scbond_it 1.534 r_angle_refined_deg 1.178 r_mcangle_it 1.002 r_mcbond_it 0.542 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.01 r_dihedral_angle_4_deg 18.812 r_dihedral_angle_3_deg 12.323 r_dihedral_angle_1_deg 5.882 r_scangle_it 2.344 r_scbond_it 1.534 r_angle_refined_deg 1.178 r_mcangle_it 1.002 r_mcbond_it 0.542 r_nbtor_refined 0.295 r_symmetry_vdw_refined 0.27 r_nbd_refined 0.195 r_symmetry_hbond_refined 0.153 r_xyhbond_nbd_refined 0.138 r_metal_ion_refined 0.089 r_chiral_restr 0.081 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4271 Nucleic Acid Atoms Solvent Atoms 343 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing