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Crystal structure of p38delta kinase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OZA PDB entry 2OZA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 10% Glycerol, 20mM Hepes pH 7.5, 150mM Sodium chloride, 10mM Methionine, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.85 56.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.271 α = 90 b = 71.305 β = 90 c = 97.933 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm KV mirrors 2003-11-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9794 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 35 97.3 0.12 0.12 10.6 5.7 27415 26.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.09 2.2 82.6 0.627 0.627 4.6 4.4 3318
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB entry 2OZA 2.09 35 27352 1368 97.3 0.208 0.208 0.205 0.242 Random
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_angle_refined_deg 1.263 r_bond_refined_d 0.011 r_bond_d_na r_bond_d_prot r_angle_d_na r_angle_d_prot r_angle_deg r_angle_deg_na r_angle_deg_prot r_dihedral_angle_d
RMS Deviations Key Refinement Restraint Deviation r_angle_refined_deg 1.263 r_bond_refined_d 0.011 r_bond_d_na r_bond_d_prot r_angle_d_na r_angle_d_prot r_angle_deg r_angle_deg_na r_angle_deg_prot r_dihedral_angle_d r_dihedral_angle_d_na r_dihedral_angle_d_prot r_improper_angle_d r_improper_angle_d_na r_improper_angle_d_prot r_mcbond_it r_mcangle_it r_scbond_it r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2758 Nucleic Acid Atoms Solvent Atoms 175 Heterogen Atoms
Software Software Software Name Purpose MAR345 data collection EPMR phasing REFMAC refinement MOSFLM data reduction SCALA data scaling