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Crystal Structure of PilZ (XAC1133) from Xanthomonas axonopodis pv citri
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 291 24% PEG 4000, 0.1 M Tris-HCl, 0.2 M magnesium chloride, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.9 33.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.125 α = 90 b = 62.125 β = 90 c = 83.543 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2007-11-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 0.978294, 0.978581, 0.953724 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 40 99 0.086 24.7 10.7 13687
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 1.92 92.1 0.601 1.74 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 35 13687 13687 730 99.77 0.19285 0.19027 0.24345 0.2579 RANDOM 17.861
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.94 0.47 0.94 -1.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.173 r_dihedral_angle_3_deg 15.739 r_dihedral_angle_4_deg 13.979 r_dihedral_angle_1_deg 5.69 r_scangle_it 2.43 r_scbond_it 1.821 r_angle_refined_deg 1.547 r_mcangle_it 1.163 r_mcbond_it 0.782 r_nbtor_refined 0.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.173 r_dihedral_angle_3_deg 15.739 r_dihedral_angle_4_deg 13.979 r_dihedral_angle_1_deg 5.69 r_scangle_it 2.43 r_scbond_it 1.821 r_angle_refined_deg 1.547 r_mcangle_it 1.163 r_mcbond_it 0.782 r_nbtor_refined 0.317 r_nbd_refined 0.238 r_symmetry_hbond_refined 0.219 r_symmetry_vdw_refined 0.193 r_xyhbond_nbd_refined 0.166 r_chiral_restr 0.105 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1433 Nucleic Acid Atoms Solvent Atoms 119 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MAR345 data collection HKL-2000 data reduction HKL-2000 data scaling SHARP phasing