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Crystal structure of a domain of a putative ABC type-2 transporter from Thermotoga maritima MSB8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 273 0.1M Na Hepes, 0.2M CaCl2, 28% PEG 400, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 2.56 51.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.598 α = 90 b = 65.598 β = 90 c = 141.192 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD APS-1 Mirror 2008-02-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97934 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 56.8 99.6 0.05 0.05 65.696 13.4 8587 -3 64.88
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 99.2 0.713 0.713 3.4 10.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 56.8 8537 403 99.44 0.205 0.204 0.2744 0.227 0.285 RANDOM 51.47
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.22 -0.61 -1.22 1.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.287 r_dihedral_angle_4_deg 19.184 r_dihedral_angle_3_deg 16.375 r_dihedral_angle_1_deg 6.99 r_scangle_it 4.221 r_scbond_it 2.579 r_angle_refined_deg 1.802 r_mcangle_it 1.655 r_angle_other_deg 1.517 r_mcbond_it 0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.287 r_dihedral_angle_4_deg 19.184 r_dihedral_angle_3_deg 16.375 r_dihedral_angle_1_deg 6.99 r_scangle_it 4.221 r_scbond_it 2.579 r_angle_refined_deg 1.802 r_mcangle_it 1.655 r_angle_other_deg 1.517 r_mcbond_it 0.91 r_mcbond_other 0.211 r_chiral_restr 0.092 r_bond_refined_d 0.022 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1092 Nucleic Acid Atoms Solvent Atoms 31 Heterogen Atoms 2
Software Software Software Name Purpose HKL-3000 phasing MLPHARE phasing DM model building SHELXD phasing ARP/wARP model building SHELXE model building RESOLVE model building Coot model building CCP4 model building REFMAC refinement HKL-3000 data reduction HKL-2000 data scaling DM phasing RESOLVE phasing CCP4 phasing