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TEM-1 Class-A beta-lactamase L201P mutant apo structure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JWP PDB entry 1JWP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.7 293 1.6M potassium phosphate, pH 8.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.85 33.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.218 α = 90 b = 59.14 β = 90 c = 87.802 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 4 mirrors 2006-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11591 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 50 92 0.061 14 25.8 16966 15609 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.92 1.99 83.3 0.354 2.48 1386
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1JWP 1.92 49.03 15609 14801 787 91.97 0.19787 0.19787 0.19552 0.197 0.2421 0.2427 RANDOM 26.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.249 r_dihedral_angle_4_deg 16.844 r_dihedral_angle_3_deg 15.177 r_dihedral_angle_1_deg 5.664 r_scangle_it 3.515 r_scbond_it 2.25 r_angle_refined_deg 1.473 r_mcangle_it 1.422 r_mcbond_it 0.874 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.249 r_dihedral_angle_4_deg 16.844 r_dihedral_angle_3_deg 15.177 r_dihedral_angle_1_deg 5.664 r_scangle_it 3.515 r_scbond_it 2.25 r_angle_refined_deg 1.473 r_mcangle_it 1.422 r_mcbond_it 0.874 r_nbtor_refined 0.302 r_nbd_refined 0.207 r_symmetry_hbond_refined 0.181 r_symmetry_vdw_refined 0.175 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.096 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2026 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection DENZO data reduction SCALEPACK data scaling EPMR phasing