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Crystal structure of SsgA-like sporulation-specific cell division protein (YP_290167.1) from Thermobifida fusca YX-ER1 at 2.60 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 277 NANODROP, 40.0% 1,2-propanediol, 0.1M Acetate pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.97 58.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.84 α = 90 b = 64.84 β = 90 c = 130.6 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-05-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97929, 0.97898 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 46.029 99.4 0.046 15.84 16529 -3 79.297
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 98.9 0.793 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.6 46.029 16493 846 99.44 0.232 0.23 0.2331 0.27 0.2726 RANDOM 63.264
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.08 2.08 -4.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.738 r_dihedral_angle_4_deg 21.95 r_dihedral_angle_3_deg 16.165 r_scangle_it 6.667 r_dihedral_angle_1_deg 4.67 r_scbond_it 4.446 r_mcangle_it 2.408 r_angle_refined_deg 1.414 r_mcbond_it 1.396 r_angle_other_deg 1.012
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.738 r_dihedral_angle_4_deg 21.95 r_dihedral_angle_3_deg 16.165 r_scangle_it 6.667 r_dihedral_angle_1_deg 4.67 r_scbond_it 4.446 r_mcangle_it 2.408 r_angle_refined_deg 1.414 r_mcbond_it 1.396 r_angle_other_deg 1.012 r_symmetry_vdw_other 0.248 r_nbd_refined 0.206 r_mcbond_other 0.203 r_symmetry_vdw_refined 0.182 r_nbtor_refined 0.179 r_nbd_other 0.175 r_xyhbond_nbd_refined 0.127 r_chiral_restr 0.092 r_nbtor_other 0.087 r_symmetry_hbond_refined 0.07 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2892 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing autoSHARP phasing