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Crystal structure of Puue Allantoinase complexed with ACA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3CL6 PDB ENTRY 3CL6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 298 0.2M (NH4)2SO4, 0.1M NaCacodylate, pH 6.5, 30% PEG 8000, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.06 40.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.723 α = 90 b = 97.723 β = 90 c = 61.318 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2007-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 69.2 87.2 0.151 9 3.6 24175 24175
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.25 2.37 83.6 0.357 2.8 3.3 3346
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3CL6 2.25 69.1 22962 22962 1213 87.38 0.20784 0.2067 0.2136 0.22967 0.2344 RANDOM 20.549
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.47 -1.47 2.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.386 r_dihedral_angle_3_deg 23.443 r_dihedral_angle_4_deg 23.423 r_scangle_it 8.345 r_mcangle_it 6.465 r_scbond_it 6.337 r_dihedral_angle_1_deg 4.906 r_mcbond_it 4.505 r_angle_refined_deg 1.561 r_nbtor_refined 0.336
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.386 r_dihedral_angle_3_deg 23.443 r_dihedral_angle_4_deg 23.423 r_scangle_it 8.345 r_mcangle_it 6.465 r_scbond_it 6.337 r_dihedral_angle_1_deg 4.906 r_mcbond_it 4.505 r_angle_refined_deg 1.561 r_nbtor_refined 0.336 r_symmetry_vdw_refined 0.307 r_symmetry_hbond_refined 0.304 r_nbd_refined 0.274 r_xyhbond_nbd_refined 0.247 r_chiral_restr 0.074 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4938 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction SCALA data scaling PHASES phasing