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Crystal Structure of a Mycobacterial Protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 1 M Ammonium sulphate, 0.1 M Sodium citrate pH 5.5, 20 mM Manganese chloride, 1 mM Sodium thiosulphate, 100 mM uridine-5 -diphosphate-glucose , VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.81 56.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.823 α = 90 b = 86.823 β = 90 c = 103.829 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2006-08-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 33.3 9.3 4.4 14197 13439
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 0.515
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Rigid body refinement THROUGHOUT 2.5 33.3 13439 711 98.99 0.22044 0.21992 0.2164 0.23035 0.2268 RANDOM 23.946
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.24 0.24 -0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.539 r_dihedral_angle_3_deg 13.04 r_dihedral_angle_4_deg 11.153 r_dihedral_angle_1_deg 3.788 r_angle_refined_deg 0.887 r_scangle_it 0.349 r_nbtor_refined 0.295 r_mcangle_it 0.198 r_scbond_it 0.197 r_nbd_refined 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.539 r_dihedral_angle_3_deg 13.04 r_dihedral_angle_4_deg 11.153 r_dihedral_angle_1_deg 3.788 r_angle_refined_deg 0.887 r_scangle_it 0.349 r_nbtor_refined 0.295 r_mcangle_it 0.198 r_scbond_it 0.197 r_nbd_refined 0.15 r_symmetry_hbond_refined 0.131 r_symmetry_vdw_refined 0.129 r_mcbond_it 0.109 r_xyhbond_nbd_refined 0.079 r_chiral_restr 0.051 r_bond_refined_d 0.005 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2250 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling