☰ Navigation Tabs
LpoA (YraM) C-domain from Haemophilus influenzae, a regulator of PBP1A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 295 1.0M Li sulfate monohydrate, 2% W/V PEG 8000 and 0.05% BME, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.34 47.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.907 α = 90 b = 50.644 β = 106.73 c = 63.676 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 165 CCD MARRESEARCH Si(111)Monochromator 2004-10-28 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 5ID-B 0.97857,0.97843,0.96321 APS 5ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 47.1 99.4 0.044 12.2 3.14 144362 143557 14.73
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.4 99.3 0.428 2.8 3.1 14456
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.35 38.95 73215 7201 99.39 0.16 0.157 0.194 0.204 RANDOM 14.197
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.02 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.779 r_dihedral_angle_4_deg 14.455 r_dihedral_angle_3_deg 11.622 r_sphericity_free 7.731 r_dihedral_angle_1_deg 5.31 r_sphericity_bonded 5.238 r_scangle_it 5.018 r_scbond_it 3.53 r_mcangle_it 2.456 r_angle_other_deg 1.636
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.779 r_dihedral_angle_4_deg 14.455 r_dihedral_angle_3_deg 11.622 r_sphericity_free 7.731 r_dihedral_angle_1_deg 5.31 r_sphericity_bonded 5.238 r_scangle_it 5.018 r_scbond_it 3.53 r_mcangle_it 2.456 r_angle_other_deg 1.636 r_mcbond_it 1.616 r_rigid_bond_restr 1.598 r_angle_refined_deg 1.563 r_mcbond_other 0.898 r_bond_refined_d 0.015 r_chiral_restr 0.007 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2433 Nucleic Acid Atoms Solvent Atoms 353 Heterogen Atoms 9
Software Software Software Name Purpose d*TREK data scaling SOLVE phasing REFMAC refinement PDB_EXTRACT data extraction d*TREK data reduction