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The crystal structure of OspA mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OY7 PDB entry 2OY7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 293 30% PEG400, 0.1M Tris-HCl, 10mg/ml protein with 4mM Thioflavin-T, pH 9, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.41 48.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.293 α = 90 b = 83.647 β = 90 c = 106.153 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2007-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 0.95373 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 50 99.8 0.074 22.2 6.1 82033
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 100 0.78 2.5 5.9 8124
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2OY7 1.65 20 77805 77805 4100 98.4 0.20407 0.20407 0.20214 0.2205 0.24033 0.2571 RANDOM 21.523
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 -0.63 0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.322 r_dihedral_angle_3_deg 14.912 r_dihedral_angle_4_deg 13.752 r_dihedral_angle_1_deg 8.118 r_scangle_it 4.801 r_scbond_it 3.524 r_mcangle_it 2.104 r_angle_refined_deg 1.833 r_mcbond_it 1.557 r_angle_other_deg 0.971
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.322 r_dihedral_angle_3_deg 14.912 r_dihedral_angle_4_deg 13.752 r_dihedral_angle_1_deg 8.118 r_scangle_it 4.801 r_scbond_it 3.524 r_mcangle_it 2.104 r_angle_refined_deg 1.833 r_mcbond_it 1.557 r_angle_other_deg 0.971 r_mcbond_other 0.388 r_nbd_refined 0.224 r_symmetry_vdw_refined 0.224 r_symmetry_vdw_other 0.222 r_nbd_other 0.206 r_symmetry_hbond_refined 0.198 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.126 r_nbtor_other 0.09 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4807 Nucleic Acid Atoms Solvent Atoms 517 Heterogen Atoms 80
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing