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B. thetaiotaomicron SusD with beta-cyclodextrin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3CK9 PDB entry 3CK9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 seeding in batch 6 298 50mM sodium cacodylate, 75mM Calcium acetate, 14% PEG 8000, 10mM beta-cyclodextrin, pH 6.0, seeding in batch, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.6 52.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.67 α = 65.06 b = 73.14 β = 71.95 c = 83.55 γ = 69.76
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CCD BRUKER SMART 6000 mirrors 2007-09-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE OTHER
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 60.2 94.2 0.033 16 4.3 66380 66380
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 82.7 0.073 6.6 1.7 8307
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3CK9 2.1 60.19 65461 65461 6638 95.1 0.169 0.169 0.169 0.1762 0.2 0.206 random 16.416
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.515 5.154 -3.318 0.567 0.171 2.948
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 2.531 c_scbond_it 1.863 c_mcangle_it 1.53 c_angle_d 1.178 c_mcbond_it 1.067 c_bond_d 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8049 Nucleic Acid Atoms Solvent Atoms 988 Heterogen Atoms 198
Software Software Software Name Purpose SAINT data scaling AMoRE phasing CNS refinement PDB_EXTRACT data extraction PROTEUM PLUS data collection PROTEUM PLUS data reduction