☰ Navigation Tabs
B. thetaiotaomicron SusD with alpha-cyclodextrin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3CK8 PDB entry 3CK8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 seeding in batch 8.5 298 50mM Tris pH 8.5, 100mM sodium acetate, 15% PEG 4000, 2.5mM alpha-cyclodextrin, seeding in batch, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.56 51.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.1 α = 90 b = 163.3 β = 97.2 c = 123.12 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CCD BRUKER SMART 6000 mirrors 2007-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE OTHER
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 67.5 93.4 0.096 6.9 4.5 127524 127524
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 81.2 0.213 1.9 1.5 16027
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3CK8 2.1 67.5 127468 114786 12682 93.1 0.194 0.194 0.194 0.2008 0.237 0.2417 random 12.357
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.202 -1.292 1.24 -2.442
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 2.535 c_scbond_it 1.815 c_mcangle_it 1.666 c_angle_deg 1.192 c_mcbond_it 1.104 c_bond_d 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16002 Nucleic Acid Atoms Solvent Atoms 1332 Heterogen Atoms 136
Software Software Software Name Purpose SAINT data scaling AMoRE phasing CNS refinement PDB_EXTRACT data extraction PROTEUM PLUS data collection PROTEUM PLUS data reduction