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Crystal structure of a protein of unknown function (eca1910) from pectobacterium atrosepticum scri1043 at 2.20 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 NANODROP, 1.4M Na3Citrate, 0.1M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.19 61.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.901 α = 90 b = 100.901 β = 90 c = 46.765 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2008-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97908 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 29.123 99.9 0.106 0.106 5.1 7.3 14004 39.316
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 100 0.716 0.716 1.1 7.4 1022
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 29.123 13985 695 99.94 0.195 0.194 0.1968 0.22 0.2304 RANDOM 34.586
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.95 0.48 0.95 -1.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.159 r_dihedral_angle_3_deg 13.252 r_dihedral_angle_4_deg 12.267 r_scangle_it 6.506 r_scbond_it 4.979 r_dihedral_angle_1_deg 4.531 r_mcangle_it 2.784 r_mcbond_it 2.203 r_angle_refined_deg 1.443 r_angle_other_deg 1.039
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.159 r_dihedral_angle_3_deg 13.252 r_dihedral_angle_4_deg 12.267 r_scangle_it 6.506 r_scbond_it 4.979 r_dihedral_angle_1_deg 4.531 r_mcangle_it 2.784 r_mcbond_it 2.203 r_angle_refined_deg 1.443 r_angle_other_deg 1.039 r_mcbond_other 0.489 r_symmetry_vdw_other 0.223 r_symmetry_vdw_refined 0.218 r_nbd_refined 0.171 r_nbtor_refined 0.169 r_nbd_other 0.153 r_xyhbond_nbd_refined 0.133 r_symmetry_hbond_refined 0.106 r_chiral_restr 0.086 r_nbtor_other 0.085 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1405 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction