☰ Navigation Tabs
Crystal structure of putative TetR transcriptional regulator (YP_510936.1) from Jannaschia sp. CCS1 at 1.79 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 NANODROP, 0.457M Ammonium dihydrogen phosphate, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.37 48.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.283 α = 99.23 b = 46.044 β = 100.39 c = 60.761 γ = 104.79
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2008-01-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97961 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 29.801 85.8 0.078 0.078 7.4 3.9 32780 22.696
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.84 41.6 0.755 0.755 1 3.9 1187
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.79 29.801 32777 1640 85.78 0.211 0.209 0.2142 0.243 0.247 RANDOM 22.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.43 0.24 -0.05 -1.27 -0.19 -1.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.748 r_dihedral_angle_4_deg 11.316 r_dihedral_angle_3_deg 9.115 r_scangle_it 4.436 r_scbond_it 3.245 r_dihedral_angle_1_deg 3.178 r_mcangle_it 2.263 r_angle_refined_deg 1.835 r_angle_other_deg 1.682 r_mcbond_it 1.674
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.748 r_dihedral_angle_4_deg 11.316 r_dihedral_angle_3_deg 9.115 r_scangle_it 4.436 r_scbond_it 3.245 r_dihedral_angle_1_deg 3.178 r_mcangle_it 2.263 r_angle_refined_deg 1.835 r_angle_other_deg 1.682 r_mcbond_it 1.674 r_mcbond_other 0.281 r_symmetry_vdw_other 0.215 r_nbd_refined 0.159 r_nbtor_refined 0.14 r_chiral_restr 0.12 r_nbd_other 0.114 r_symmetry_vdw_refined 0.104 r_symmetry_hbond_refined 0.097 r_xyhbond_nbd_refined 0.089 r_nbtor_other 0.069 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_gen_planes_other 0.004 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2821 Nucleic Acid Atoms Solvent Atoms 239 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction