3CJC

Actin dimer cross-linked by V. cholerae MARTX toxin and complexed with DNase I and Gelsolin-segment 1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52981.5 M (NH4)SO4, 0.1 M Bis-Tris, 0.1 M NaCl, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.867.65

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 89.303α = 90
b = 108.566β = 90
c = 133.761γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152007-04-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.21.000ALS8.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.99099.20.20746.21233726
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.94.0497.60.4815.61193

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3.974.33845040068.260.2260.2230.278RANDOM47.869
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-13.776.737.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.615
r_dihedral_angle_3_deg11.866
r_dihedral_angle_4_deg9.353
r_dihedral_angle_1_deg2.853
r_mcangle_it1.587
r_mcbond_it1.103
r_angle_refined_deg0.928
r_angle_other_deg0.78
r_scangle_it0.567
r_scbond_it0.323
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.615
r_dihedral_angle_3_deg11.866
r_dihedral_angle_4_deg9.353
r_dihedral_angle_1_deg2.853
r_mcangle_it1.587
r_mcbond_it1.103
r_angle_refined_deg0.928
r_angle_other_deg0.78
r_scangle_it0.567
r_scbond_it0.323
r_chiral_restr0.054
r_mcbond_other0.05
r_bond_other_d0.007
r_bond_refined_d0.006
r_gen_planes_refined0.003
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5936
Nucleic Acid Atoms
Solvent Atoms2
Heterogen Atoms91

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
BOSdata collection