☰ Navigation Tabs
Crystal structure of the endo-beta-1,4-mannanase from Alicyclobacillus acidocaldarius
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 291 0.2M ammonium dihydrogen phosphate, 0.1M sodium citrate (pH 4.6), VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.9 35.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.338 α = 90 b = 75.554 β = 90 c = 88.016 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS VII mirrors M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 35.07 97.3 0.055 20.8 6.92 23386
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 89.4 0.144 10.2 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 35.07 22180 1206 97.25 0.17571 0.1737 0.1727 0.21208 0.2101 RANDOM 16.037
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.02 -0.63 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.575 r_dihedral_angle_4_deg 15.61 r_dihedral_angle_3_deg 12.809 r_dihedral_angle_1_deg 5.626 r_scangle_it 2.282 r_scbond_it 1.418 r_angle_refined_deg 1.086 r_mcangle_it 0.921 r_mcbond_it 0.577 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.575 r_dihedral_angle_4_deg 15.61 r_dihedral_angle_3_deg 12.809 r_dihedral_angle_1_deg 5.626 r_scangle_it 2.282 r_scbond_it 1.418 r_angle_refined_deg 1.086 r_mcangle_it 0.921 r_mcbond_it 0.577 r_nbtor_refined 0.3 r_symmetry_vdw_refined 0.208 r_nbd_refined 0.182 r_symmetry_hbond_refined 0.152 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.075 r_bond_refined_d 0.008 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2521 Nucleic Acid Atoms Solvent Atoms 221 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing