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Complex of Dictyostelium Discoideum Actin with Gelsolin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NM1 PDB ENTRY 1NM1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.1M HEPES, pH7.5, 1.7M Li2SO4, 2mM ATP, 1mM EDTA, 5% Glycerol, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.03 59.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 178.881 α = 90 b = 69.172 β = 104.36 c = 56.564 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 1-m Pt/Pd-coated ULE mirror 2007-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-BM 0.9999 APS 17-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 96.8 0.071 0.071 36.6 7.3 88709 85829
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 78.4 0.521 0.521 2.1 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1NM1 1.6 43.73 88763 81476 4322 96.66 0.15211 0.1497 0.1511 0.19739 0.1983 RANDOM 26.242
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.04 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.382 r_dihedral_angle_4_deg 19.072 r_dihedral_angle_3_deg 13.232 r_sphericity_free 11.335 r_sphericity_bonded 8.136 r_scangle_it 7.091 r_scbond_it 5.546 r_dihedral_angle_1_deg 5.035 r_mcangle_it 4.348 r_rigid_bond_restr 3.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.382 r_dihedral_angle_4_deg 19.072 r_dihedral_angle_3_deg 13.232 r_sphericity_free 11.335 r_sphericity_bonded 8.136 r_scangle_it 7.091 r_scbond_it 5.546 r_dihedral_angle_1_deg 5.035 r_mcangle_it 4.348 r_rigid_bond_restr 3.302 r_mcbond_it 3.226 r_angle_refined_deg 1.326 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.224 r_nbd_refined 0.2 r_symmetry_hbond_refined 0.175 r_xyhbond_nbd_refined 0.149 r_metal_ion_refined 0.106 r_chiral_restr 0.092 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3855 Nucleic Acid Atoms Solvent Atoms 461 Heterogen Atoms 96
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling