☰ Navigation Tabs
The Crystal Structure of the GspK-GspI-GspJ complex from enterotoxigenic Escherichia coli Type 2 Secretion System
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 298 25-30% PEG 3350, 0.1M NA ACETATE (PH 5.0), 0.1M CACL2, vapor diffusion, sitting drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.09 41.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.118 α = 90 b = 96.118 β = 90 c = 108.436 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2007-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 1.54704 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 36.2 100 0.078 0.078 5.9 6.8 26464 46.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 100 0.537 0.537 1.4 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 2.2 35.96 25040 1338 99.86 0.19492 0.19155 0.2038 0.25942 RANDOM 55.68
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.3 -1.3 2.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.809 r_dihedral_angle_4_deg 15.681 r_dihedral_angle_3_deg 14.035 r_dihedral_angle_1_deg 6.246 r_scangle_it 2.718 r_scbond_it 2.031 r_angle_refined_deg 1.279 r_mcangle_it 1.111 r_angle_other_deg 0.896 r_mcbond_it 0.822
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.809 r_dihedral_angle_4_deg 15.681 r_dihedral_angle_3_deg 14.035 r_dihedral_angle_1_deg 6.246 r_scangle_it 2.718 r_scbond_it 2.031 r_angle_refined_deg 1.279 r_mcangle_it 1.111 r_angle_other_deg 0.896 r_mcbond_it 0.822 r_symmetry_hbond_refined 0.239 r_symmetry_vdw_other 0.21 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.204 r_nbd_other 0.2 r_xyhbond_nbd_refined 0.178 r_nbtor_refined 0.173 r_mcbond_other 0.153 r_metal_ion_refined 0.141 r_nbtor_other 0.084 r_chiral_restr 0.074 r_xyhbond_nbd_other 0.032 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4108 Nucleic Acid Atoms Solvent Atoms 190 Heterogen Atoms 4
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHARP phasing REFMAC refinement PDB_EXTRACT data extraction