X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.6277100 mM sodium acetate pH 4.6 and 15% (w/v) PEG 20000, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.0540.05

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.012α = 90
b = 65.305β = 90
c = 75.848γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDMARMOSAIC 325 mm CCD2007-04-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL11-1SSRLBL11-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6501004263542635

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.6504263542574214799.890.1990.1980.228RANDOM20.102
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.06-0.10.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.269
r_dihedral_angle_4_deg18.11
r_dihedral_angle_3_deg11.209
r_dihedral_angle_1_deg4.967
r_scangle_it3.634
r_scbond_it2.341
r_mcangle_it1.475
r_angle_refined_deg1.182
r_mcbond_it0.906
r_nbtor_refined0.307
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.269
r_dihedral_angle_4_deg18.11
r_dihedral_angle_3_deg11.209
r_dihedral_angle_1_deg4.967
r_scangle_it3.634
r_scbond_it2.341
r_mcangle_it1.475
r_angle_refined_deg1.182
r_mcbond_it0.906
r_nbtor_refined0.307
r_nbd_refined0.203
r_xyhbond_nbd_refined0.142
r_symmetry_vdw_refined0.136
r_symmetry_hbond_refined0.126
r_metal_ion_refined0.086
r_chiral_restr0.081
r_bond_refined_d0.01
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2494
Nucleic Acid Atoms
Solvent Atoms255
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing