☰ Navigation Tabs
Crystal Structure Analysis of SERA5E from plasmodium falciparum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 298 0.2M KH2PO4, 12% PEG 8000, 5% PEG 400, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.43 49.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.368 α = 90 b = 103.368 β = 90 c = 72.508 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.968 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 24.74 26819
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.79 24.74 25466 1344 98.46 0.1693 0.16772 0.19844 0.2802 RANDOM 36.762
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 -0.02 -0.04 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.933 r_dihedral_angle_4_deg 21.856 r_dihedral_angle_3_deg 14.422 r_dihedral_angle_1_deg 5.769 r_scangle_it 3.397 r_scbond_it 2.298 r_mcangle_it 1.429 r_angle_refined_deg 1.361 r_mcbond_it 0.829 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.933 r_dihedral_angle_4_deg 21.856 r_dihedral_angle_3_deg 14.422 r_dihedral_angle_1_deg 5.769 r_scangle_it 3.397 r_scbond_it 2.298 r_mcangle_it 1.429 r_angle_refined_deg 1.361 r_mcbond_it 0.829 r_nbtor_refined 0.308 r_symmetry_hbond_refined 0.26 r_symmetry_vdw_refined 0.249 r_nbd_refined 0.207 r_xyhbond_nbd_refined 0.178 r_metal_ion_refined 0.115 r_chiral_restr 0.105 r_symmetry_metal_ion_refined 0.085 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2029 Nucleic Acid Atoms Solvent Atoms 188 Heterogen Atoms 11
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling