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Pyridine Nucleotide Complexes with Bacillus anthracis Coenzyme A-Disulfide Reductase: A Structural Analysis of Dual NAD(P)H Specificity
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 288 16-26% 2-methyl-2,4-pentanediol, 0.2 M magnesium acetate, 0.1 M sodium cacodylate, pH 6.5, and 2 mM NAD(P)+, VAPOR DIFFUSION, SITTING DROP, temperature 288K
Crystal Properties Matthews coefficient Solvent content 3.02 59.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 170.258 α = 90 b = 80.763 β = 103.98 c = 98.37 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-11-05 M MAD 2 1 3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C 0.9791 NSLS X26C 2 SYNCHROTRON NSLS BEAMLINE X26C 0.9796 NSLS X26C 3 SYNCHROTRON NSLS BEAMLINE X26C 0.9500 NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 38.22 97.5 0.08 8.6 3.85 200403 195454
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 96.4 0.413 2.9 3.87 20110
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 38.22 96824 94336 5014 97.43 0.20064 0.19909 0.2009 0.22976 0.2316 RANDOM 33.447
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.9 -0.98 1.93 -1.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.694 r_dihedral_angle_4_deg 19.916 r_dihedral_angle_3_deg 15.977 r_dihedral_angle_1_deg 6.132 r_scangle_it 3.894 r_scbond_it 2.388 r_angle_refined_deg 1.492 r_mcangle_it 1.46 r_mcbond_it 0.948 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.694 r_dihedral_angle_4_deg 19.916 r_dihedral_angle_3_deg 15.977 r_dihedral_angle_1_deg 6.132 r_scangle_it 3.894 r_scbond_it 2.388 r_angle_refined_deg 1.492 r_mcangle_it 1.46 r_mcbond_it 0.948 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.256 r_nbd_refined 0.209 r_xyhbond_nbd_refined 0.143 r_symmetry_hbond_refined 0.14 r_chiral_restr 0.099 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6958 Nucleic Acid Atoms Solvent Atoms 551 Heterogen Atoms 202
Software Software Software Name Purpose REFMAC refinement CBASS data collection d*TREK data reduction d*TREK data scaling SOLVE phasing