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Crystal structure of Gadd45 gamma
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 100 mM HEPES, 1.9 M NaH2PO4 , pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2 44.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.024 α = 90 b = 122.468 β = 90 c = 105.421 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2005-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.4 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 35.1 99.8 0.037 15.7 3.74 31130 30674
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 99.9 0.269 3.3 3.73 3063
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 35.1 29092 1547 98.41 0.22617 0.2238 0.2559 0.27169 0.3033 RANDOM 37.913
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.53 -0.09 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.949 r_dihedral_angle_4_deg 16.3 r_dihedral_angle_3_deg 14.179 r_dihedral_angle_1_deg 5.532 r_scangle_it 3.541 r_scbond_it 2.379 r_mcangle_it 1.554 r_angle_refined_deg 1.45 r_mcbond_it 0.975 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.949 r_dihedral_angle_4_deg 16.3 r_dihedral_angle_3_deg 14.179 r_dihedral_angle_1_deg 5.532 r_scangle_it 3.541 r_scbond_it 2.379 r_mcangle_it 1.554 r_angle_refined_deg 1.45 r_mcbond_it 0.975 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.213 r_nbd_refined 0.209 r_symmetry_hbond_refined 0.185 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.099 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2035 Nucleic Acid Atoms Solvent Atoms 235 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection CrystalClear data reduction CrystalClear data scaling SnB phasing