☰ Navigation Tabs
Photoswitchable red fluorescent protein psRFP, off-state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3CFA PDB ENTRY 3CFA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.1M TRIS, 65%(w/v) MPD, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.79 55.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.819 α = 90 b = 97.851 β = 90 c = 241.827 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirror 2007-11-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 20 99.4 0.073 19.1 4.3 115913 115191 2 32.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.75 1.78 99.5 0.82 2 4 5751
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3CFA 1.75 12.27 115913 109836 5784 99.44 0.20358 0.20212 0.2031 0.2304 0.2311 RANDOM 39.785
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.7 1.26 -2.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.46 r_dihedral_angle_4_deg 17.397 r_dihedral_angle_3_deg 13.82 r_dihedral_angle_1_deg 5.943 r_scangle_it 1.656 r_angle_refined_deg 1.093 r_scbond_it 1.054 r_mcangle_it 0.914 r_mcbond_it 0.531 r_symmetry_hbond_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.46 r_dihedral_angle_4_deg 17.397 r_dihedral_angle_3_deg 13.82 r_dihedral_angle_1_deg 5.943 r_scangle_it 1.656 r_angle_refined_deg 1.093 r_scbond_it 1.054 r_mcangle_it 0.914 r_mcbond_it 0.531 r_symmetry_hbond_refined 0.304 r_nbtor_refined 0.299 r_symmetry_vdw_refined 0.225 r_nbd_refined 0.203 r_xyhbond_nbd_refined 0.163 r_chiral_restr 0.069 r_bond_refined_d 0.006 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7581 Nucleic Acid Atoms Solvent Atoms 908 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MAR345dtb data collection DENZO data reduction SCALEPACK data scaling MOLREP phasing