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High-resolution structure of blue fluorescent antibody EP2-19G2 in complex with stilbene hapten at 100K
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FL3 PDB ENTRY 1FL3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 20% PEG 4000, 0.2M KSCN, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K, pH 5.50
Crystal Properties Matthews coefficient Solvent content 2.61 52.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 194.707 α = 90 b = 61.015 β = 116.65 c = 92.246 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 MONOCHROMATOR 2005-01-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 97.4 0.052 30.3 3.8 121549 58.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 96.2 0.704 1.9 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1FL3 1.6 42.03 118453 6274 97.3 0.187 0.186 0.1951 0.218 0.2281 RANDOM 18.11
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.34 -0.09 -0.4 0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.383 r_dihedral_angle_4_deg 22.598 r_dihedral_angle_3_deg 12.61 r_dihedral_angle_1_deg 6.96 r_scangle_it 3.132 r_scbond_it 2.37 r_angle_refined_deg 1.597 r_mcangle_it 1.419 r_mcbond_it 1.212 r_angle_other_deg 0.911
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.383 r_dihedral_angle_4_deg 22.598 r_dihedral_angle_3_deg 12.61 r_dihedral_angle_1_deg 6.96 r_scangle_it 3.132 r_scbond_it 2.37 r_angle_refined_deg 1.597 r_mcangle_it 1.419 r_mcbond_it 1.212 r_angle_other_deg 0.911 r_symmetry_vdw_other 0.256 r_mcbond_other 0.248 r_symmetry_vdw_refined 0.216 r_nbd_other 0.205 r_nbd_refined 0.201 r_symmetry_hbond_refined 0.195 r_nbtor_refined 0.176 r_xyhbond_nbd_refined 0.161 r_xyhbond_nbd_other 0.109 r_chiral_restr 0.095 r_nbtor_other 0.086 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6562 Nucleic Acid Atoms Solvent Atoms 590 Heterogen Atoms 82
Software Software Software Name Purpose PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling