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Crystal structure of the conserved protein of locus EF_3021 from Enterococcus faecalis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 291 1M Trisodium citrate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.28 46.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.191 α = 90 b = 55.137 β = 108.2 c = 62.429 γ = 90
Symmetry Space Group P 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-06-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9793 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 35.9 98.91 0.107 6.6 6.9 23947 23947 -3 23.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 89.32 0.41 2.4 5 1506
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 35.9 22725 22725 1222 98.91 0.164 0.164 0.162 0.205 0.2315 RANDOM 27.35
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.04 1.84 -1.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.654 r_dihedral_angle_4_deg 18.463 r_dihedral_angle_3_deg 14.583 r_dihedral_angle_1_deg 4.881 r_scangle_it 3.679 r_scbond_it 2.457 r_mcangle_it 1.436 r_angle_refined_deg 1.373 r_mcbond_it 1.219 r_angle_other_deg 0.956
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.654 r_dihedral_angle_4_deg 18.463 r_dihedral_angle_3_deg 14.583 r_dihedral_angle_1_deg 4.881 r_scangle_it 3.679 r_scbond_it 2.457 r_mcangle_it 1.436 r_angle_refined_deg 1.373 r_mcbond_it 1.219 r_angle_other_deg 0.956 r_symmetry_vdw_other 0.341 r_mcbond_other 0.232 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.193 r_nbd_other 0.186 r_symmetry_hbond_refined 0.184 r_nbtor_refined 0.172 r_xyhbond_nbd_refined 0.137 r_nbtor_other 0.088 r_chiral_restr 0.077 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2722 Nucleic Acid Atoms Solvent Atoms 188 Heterogen Atoms 20
Software Software Software Name Purpose MLPHARE phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection DENZO data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing O model building Coot model building