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Crystal structure of a putative antidote protein of plasmid maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at 1.60 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 NANODROP, 40.0% 2-Methyl-2,4-pentanediol, 5.0% PEG 8000, 0.1M Sodium cacodylate pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.68 54.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.07 α = 90 b = 36.71 β = 98.38 c = 50.05 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-01-22 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97925, 0.97883 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 25.214 98.3 0.035 13.26 16808 -3 19.415
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 89.6 0.359 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 25.214 16798 849 99.46 0.168 0.166 0.1739 0.202 0.2045 RANDOM 12.034
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.85 0.34 -0.4 -0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.495 r_dihedral_angle_4_deg 18.034 r_dihedral_angle_3_deg 11.596 r_scangle_it 8.233 r_scbond_it 5.421 r_dihedral_angle_1_deg 4.712 r_mcangle_it 2.971 r_mcbond_it 1.78 r_angle_refined_deg 1.566 r_angle_other_deg 1.498
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.495 r_dihedral_angle_4_deg 18.034 r_dihedral_angle_3_deg 11.596 r_scangle_it 8.233 r_scbond_it 5.421 r_dihedral_angle_1_deg 4.712 r_mcangle_it 2.971 r_mcbond_it 1.78 r_angle_refined_deg 1.566 r_angle_other_deg 1.498 r_mcbond_other 0.542 r_chiral_restr 0.106 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_gen_planes_other 0.004 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 700 Nucleic Acid Atoms Solvent Atoms 97 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing autoSHARP phasing