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Bacteriophage T4 lysozyme mutant R96V in wildtype background at low temperature
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1L63
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 100 MM MES, 200 MM LITHIUM SULFATE, 35% MPD, 50 MM 1,6-HEXANEDIOL, 12.5 MG/ML, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K, pH 6.00
Crystal Properties Matthews coefficient Solvent content 2.37 48.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.82 α = 90 b = 99.316 β = 90 c = 123.012 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2001-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 23.881 99.1 0.059 0.059 10.5 3 58798 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.87 1.97 95.5 0.235 0.235 3.2 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1L63 1.87 23.82 57595 1134 99.1 0.187 0.187 0.1881 0.231 RANDOM 17.477
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.576 r_dihedral_angle_4_deg 16.409 r_dihedral_angle_3_deg 13.662 r_dihedral_angle_1_deg 4.709 r_scangle_it 2.632 r_scbond_it 1.668 r_angle_refined_deg 1.112 r_mcangle_it 0.956 r_mcbond_it 0.585 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.576 r_dihedral_angle_4_deg 16.409 r_dihedral_angle_3_deg 13.662 r_dihedral_angle_1_deg 4.709 r_scangle_it 2.632 r_scbond_it 1.668 r_angle_refined_deg 1.112 r_mcangle_it 0.956 r_mcbond_it 0.585 r_nbtor_refined 0.298 r_nbd_refined 0.192 r_symmetry_vdw_refined 0.177 r_symmetry_hbond_refined 0.144 r_xyhbond_nbd_refined 0.126 r_chiral_restr 0.072 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5310 Nucleic Acid Atoms Solvent Atoms 859 Heterogen Atoms 62
Software Software Software Name Purpose EPMR phasing REFMAC refinement MOSFLM data reduction SCALA data scaling