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Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 0.1M tris, 24% PEG 1550, 0.04M sodium acetate. TCEP added to 20mM after crystal formation., pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.97 37.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.174 α = 90 b = 62.353 β = 90 c = 69.618 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2007-08-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 1.00 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.502 50 97.2 35231 35231 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.502 1.55 95.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.502 30 33419 33419 1769 97.17 0.16847 0.16847 0.16715 0.1744 0.19308 0.2017 RANDOM 14.445
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.69 0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.482 r_dihedral_angle_3_deg 11.72 r_dihedral_angle_4_deg 7.21 r_dihedral_angle_1_deg 6.262 r_sphericity_free 4.367 r_scangle_it 2.908 r_scbond_it 2.073 r_sphericity_bonded 1.86 r_mcangle_it 1.471 r_angle_refined_deg 1.469
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.482 r_dihedral_angle_3_deg 11.72 r_dihedral_angle_4_deg 7.21 r_dihedral_angle_1_deg 6.262 r_sphericity_free 4.367 r_scangle_it 2.908 r_scbond_it 2.073 r_sphericity_bonded 1.86 r_mcangle_it 1.471 r_angle_refined_deg 1.469 r_rigid_bond_restr 1.19 r_mcbond_it 0.999 r_angle_other_deg 0.825 r_symmetry_vdw_other 0.321 r_mcbond_other 0.319 r_nbd_refined 0.202 r_nbd_other 0.198 r_nbtor_refined 0.167 r_xyhbond_nbd_refined 0.148 r_nbtor_other 0.111 r_symmetry_hbond_refined 0.084 r_chiral_restr 0.08 r_symmetry_vdw_refined 0.066 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1809 Nucleic Acid Atoms Solvent Atoms 244 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling