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Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 0.1M tris, 24% PEG 1550, 0.04M sodium acetate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.95 36.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.187 α = 90 b = 62.363 β = 90 c = 68.803 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2007-08-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 1.00 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.312 50 98.6 52564 52564 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.312 1.36 92.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.312 30 2 49838 49838 2655 98.35 0.16464 0.16464 0.16362 0.1719 0.18377 0.194 RANDOM 11.172
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.03 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.471 r_dihedral_angle_3_deg 10.221 r_dihedral_angle_4_deg 7.986 r_dihedral_angle_1_deg 6.202 r_sphericity_free 3.474 r_scangle_it 2.548 r_scbond_it 1.751 r_sphericity_bonded 1.608 r_rigid_bond_restr 1.597 r_angle_refined_deg 1.404
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.471 r_dihedral_angle_3_deg 10.221 r_dihedral_angle_4_deg 7.986 r_dihedral_angle_1_deg 6.202 r_sphericity_free 3.474 r_scangle_it 2.548 r_scbond_it 1.751 r_sphericity_bonded 1.608 r_rigid_bond_restr 1.597 r_angle_refined_deg 1.404 r_mcangle_it 1.298 r_mcbond_it 0.841 r_angle_other_deg 0.787 r_symmetry_vdw_other 0.274 r_mcbond_other 0.267 r_nbd_refined 0.204 r_nbd_other 0.193 r_nbtor_refined 0.169 r_symmetry_hbond_refined 0.132 r_xyhbond_nbd_refined 0.114 r_nbtor_other 0.112 r_symmetry_vdw_refined 0.086 r_chiral_restr 0.078 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1834 Nucleic Acid Atoms Solvent Atoms 263 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling