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Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 sitting drop 5.8 292 PEG6000, KCL, NH4CL, MGCl2, pH 5.80, sitting drop, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.09 60.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 212.33 α = 90 b = 299.618 β = 90 c = 575.237 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 54-pole harmonic emission undulator, a vertically focusing mirror and a horizontally focusing monochromator 2005-07-28 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.1 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 50 99.5 0.168 5.4 7.2 396496 122.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 2.97 94.2 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.9 30 392516 3843 98.1 0.186 0.186 0.1777 0.233 0.2226 RANDOM 61.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.68 3.33 -1.65
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 15.9 c_scangle_it 2.2 c_mcangle_it 2.08 c_scbond_it 1.39 c_improper_angle_d 1.29 c_mcbond_it 1.18 c_angle_deg 1 c_bond_d 0.007 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 15.9 c_scangle_it 2.2 c_mcangle_it 2.08 c_scbond_it 1.39 c_improper_angle_d 1.29 c_mcbond_it 1.18 c_angle_deg 1 c_bond_d 0.007 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 29375 Nucleic Acid Atoms 61617 Solvent Atoms 7823 Heterogen Atoms 305
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling CNS refinement PDB_EXTRACT data extraction CBASS data collection HKL-2000 data reduction CNS phasing