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H-2Db complex with murine gp100
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 277 1.8M Ammonium Sulfate, 0.1M Tris, pH 9.0,
VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.11 60.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.5 α = 90 b = 176.6 β = 120 c = 85.5 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD ADSC QUANTUM 210 2007-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 19.6 96.4 67578 65171 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.7 89.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 19.6 1 67578 63514 3379 99.69 0.2456 0.24266 0.24079 0.2386 0.27859 0.2743 RANDOM 59.524
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.474 r_dihedral_angle_4_deg 22.123 r_dihedral_angle_3_deg 19.994 r_dihedral_angle_1_deg 6.65 r_mcangle_it 2.058 r_angle_refined_deg 1.475 r_scangle_it 1.407 r_mcbond_it 1.196 r_scbond_it 0.895 r_symmetry_hbond_refined 0.436
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.474 r_dihedral_angle_4_deg 22.123 r_dihedral_angle_3_deg 19.994 r_dihedral_angle_1_deg 6.65 r_mcangle_it 2.058 r_angle_refined_deg 1.475 r_scangle_it 1.407 r_mcbond_it 1.196 r_scbond_it 0.895 r_symmetry_hbond_refined 0.436 r_nbtor_refined 0.333 r_nbd_refined 0.272 r_symmetry_vdw_refined 0.269 r_xyhbond_nbd_refined 0.22 r_chiral_restr 0.097 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12590 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 129
Software Software Software Name Purpose REFMAC refinement ADSC data collection XDS data reduction XSCALE data scaling PHASER phasing