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Crystal structure of a putative methyltransferase (bce_1332) from bacillus cereus atcc 10987 at 1.64 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 NANODROP, 40.0% MPD, 5.0% PEG 8000, 0.1M Cacodylate pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.33 47.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.223 α = 90 b = 54.399 β = 109.5 c = 52.751 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2008-01-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837, 0.97964, 0.97978 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 28.194 98.1 0.072 0.072 6.5 3.9 29308 21.775
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.64 1.68 96.8 0.792 0.792 0.9 3.9 2099
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.64 28.194 29307 1491 97.85 0.167 0.165 0.1702 0.2 0.2003 RANDOM 20.725
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 -1.33 -0.19 -0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.041 r_dihedral_angle_4_deg 17.299 r_dihedral_angle_3_deg 13.441 r_scangle_it 7.574 r_dihedral_angle_1_deg 6.478 r_scbond_it 5.609 r_mcangle_it 3.039 r_mcbond_it 2.481 r_angle_refined_deg 1.561 r_angle_other_deg 0.981
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.041 r_dihedral_angle_4_deg 17.299 r_dihedral_angle_3_deg 13.441 r_scangle_it 7.574 r_dihedral_angle_1_deg 6.478 r_scbond_it 5.609 r_mcangle_it 3.039 r_mcbond_it 2.481 r_angle_refined_deg 1.561 r_angle_other_deg 0.981 r_mcbond_other 0.568 r_symmetry_vdw_other 0.296 r_nbd_refined 0.218 r_symmetry_vdw_refined 0.199 r_nbd_other 0.187 r_nbtor_refined 0.181 r_xyhbond_nbd_refined 0.164 r_metal_ion_refined 0.149 r_chiral_restr 0.105 r_nbtor_other 0.087 r_symmetry_hbond_refined 0.087 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1664 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction