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Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 0.1M tris, 22% PEG 1550, 0.02M magnesium chloride. After crystal formation TCEP added to 20mM., pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.94 36.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.964 α = 90 b = 62.236 β = 90 c = 68.882 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2007-08-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 1.00 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 93.3 41093 41093 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.45 93.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.488 30 2 32005 32005 1685 91.99 0.16616 0.16616 0.16495 0.165 0.18829 0.1648 RANDOM 11.465
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.709 r_dihedral_angle_3_deg 11.561 r_dihedral_angle_4_deg 8.729 r_dihedral_angle_1_deg 6.374 r_sphericity_free 4.876 r_scangle_it 3.103 r_sphericity_bonded 2.252 r_scbond_it 2.195 r_angle_refined_deg 1.478 r_mcangle_it 1.467
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.709 r_dihedral_angle_3_deg 11.561 r_dihedral_angle_4_deg 8.729 r_dihedral_angle_1_deg 6.374 r_sphericity_free 4.876 r_scangle_it 3.103 r_sphericity_bonded 2.252 r_scbond_it 2.195 r_angle_refined_deg 1.478 r_mcangle_it 1.467 r_mcbond_it 1.011 r_rigid_bond_restr 0.999 r_angle_other_deg 0.843 r_mcbond_other 0.354 r_symmetry_vdw_other 0.314 r_nbd_other 0.202 r_nbd_refined 0.19 r_nbtor_refined 0.171 r_symmetry_vdw_refined 0.138 r_xyhbond_nbd_refined 0.114 r_nbtor_other 0.109 r_symmetry_hbond_refined 0.106 r_chiral_restr 0.081 r_bond_other_d 0.013 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1837 Nucleic Acid Atoms Solvent Atoms 239 Heterogen Atoms 1
Software Software Software Name Purpose MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling