☰ Navigation Tabs
Crystal structure of a BAR protein from Galdieria sulphuraria
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 Protein solution (10 mg/mL Se-Met protein, 0.05 M Sodium chloride, 0.0003 M TCEP, 0.005 M Bis-Tris pH 7.0) mixed in a 1:1 ratio with the Well solution (27% MPD, 0.12 M Magnesium chloride, 0.1 M MES/Acetate pH 5.5), VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.01 59.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.962 α = 90 b = 78.962 β = 90 c = 456.028 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2007-08-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.96411 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.344 47.168 98.3 0.085 11.425 12.8 13119
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.344 3.47 98.2 0.858 1.622 9.4 1255
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.344 47.168 13115 648 99.101 0.217 0.215 0.2205 0.252 0.2534 RANDOM 74.648
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.209 0.604 1.209 -1.813
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.599 r_dihedral_angle_3_deg 19.415 r_dihedral_angle_4_deg 17.282 r_dihedral_angle_1_deg 4.917 r_angle_refined_deg 0.904 r_scangle_it 0.642 r_mcangle_it 0.385 r_scbond_it 0.38 r_nbtor_refined 0.297 r_mcbond_it 0.216
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.599 r_dihedral_angle_3_deg 19.415 r_dihedral_angle_4_deg 17.282 r_dihedral_angle_1_deg 4.917 r_angle_refined_deg 0.904 r_scangle_it 0.642 r_mcangle_it 0.385 r_scbond_it 0.38 r_nbtor_refined 0.297 r_mcbond_it 0.216 r_nbd_refined 0.213 r_symmetry_hbond_refined 0.194 r_symmetry_vdw_refined 0.175 r_xyhbond_nbd_refined 0.121 r_chiral_restr 0.074 r_bond_refined_d 0.006 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3437 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHARP phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection HKL-2000 data reduction HKL-2000 data scaling