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Structure of a mutant bovine rhodopsin in hexagonal crystal form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2J4Y The A chain of PDB entry 2J4Y, after suitable transformation into this space group.
Crystallization Crystal Properties Matthews coefficient Solvent content 3.43 64.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.3 α = 90 b = 109.3 β = 90 c = 77.7 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION The A chain of PDB entry 2J4Y, after suitable transformation into this space group. 3.4 40.42 2.05 7353 341 99.8 0.176 0.174 0.219 0.2268 72.082
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.981 0.981 -1.961
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 20.334 f_angle_d 1.495 f_chiral_restr 0.142 f_bond_d 0.012 f_plane_restr 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2589 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 37
Software Software Software Name Purpose PHENIX refinement PDB_EXTRACT data extraction REFMAC refinement