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Crystal structure of SeMet Vps75
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 0.2 M K Formate, 25% PEG3350, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.24 62.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.203 α = 90 b = 88.937 β = 90 c = 94.259 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315 0.9795,0.9686 2008-01-17 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 0.9795 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.42 20 100 0.217 20.6 22.5 26011 26011
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.42 2.55 100 0.15 1.8 18.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.42 20 26011 26009 1312 99.99 0.214 0.214 0.212 0.2175 0.256 0.2607 RANDOM 52.141
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.23 -1.18 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.226 r_dihedral_angle_4_deg 19.413 r_dihedral_angle_3_deg 16.835 r_dihedral_angle_1_deg 5.662 r_scangle_it 3.171 r_scbond_it 1.984 r_mcangle_it 1.322 r_angle_refined_deg 0.902 r_mcbond_it 0.772 r_symmetry_hbond_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.226 r_dihedral_angle_4_deg 19.413 r_dihedral_angle_3_deg 16.835 r_dihedral_angle_1_deg 5.662 r_scangle_it 3.171 r_scbond_it 1.984 r_mcangle_it 1.322 r_angle_refined_deg 0.902 r_mcbond_it 0.772 r_symmetry_hbond_refined 0.31 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.24 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.171 r_chiral_restr 0.073 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3319 Nucleic Acid Atoms Solvent Atoms 279 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection