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High Resolution Crystal Structure of Argos bound to the EGF domain of Spitz
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 294 0.1M HEPES pH 7.0, 24% ethylene glycol,(0.1-1%) PEG20000, VAPOR DIFFUSION, HANGING DROP, temperature 294K, pH 7.00
Crystal Properties Matthews coefficient Solvent content 2.65 53.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.991 α = 84.23 b = 51.275 β = 74.82 c = 69.985 γ = 75.67
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 3.0 UNDULATOR 2007-04-05 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97928, 0.91961, 0.91987, 0.89 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 94.6 0.065 11.3 3.7 75754 -3 25.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.66 71.4 0.355 2.64 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 40.76 79867 75593 4016 93.3 0.198 0.195 0.24 0.2417 RANDOM 25.66
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.57 r_dihedral_angle_4_deg 17.136 r_dihedral_angle_3_deg 12.91 r_dihedral_angle_1_deg 5.947 r_scangle_it 3.628 r_scbond_it 2.419 r_mcangle_it 1.683 r_angle_refined_deg 1.357 r_mcbond_it 1.024 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.57 r_dihedral_angle_4_deg 17.136 r_dihedral_angle_3_deg 12.91 r_dihedral_angle_1_deg 5.947 r_scangle_it 3.628 r_scbond_it 2.419 r_mcangle_it 1.683 r_angle_refined_deg 1.357 r_mcbond_it 1.024 r_nbtor_refined 0.304 r_nbd_refined 0.22 r_symmetry_vdw_refined 0.184 r_symmetry_hbond_refined 0.173 r_xyhbond_nbd_refined 0.164 r_chiral_restr 0.095 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4088 Nucleic Acid Atoms Solvent Atoms 860 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SHELXCD phasing SHELXE model building