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Crystal structure of putative acetyltransferase (YP_390128.1) from Desulfovibrio desulfuricans G20 at 2.28 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.3 277 NANODROP, 0.2M K Formate, 20.0% PEG 3350, No Buffer pH 7.3, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.82 56.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 249.617 α = 90 b = 249.617 β = 90 c = 104.9 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-09-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.0000, 0.9795, 0.9797 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.28 48.057 94.6 0.054 13.25 2.75 105055 -3 41.55
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.28 2.36 67.6 0.446 2.1 2.09
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.28 48.057 105052 5271 95.14 0.182 0.18 0.1851 0.223 0.2251 RANDOM 40.479
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.86 -0.43 -0.86 1.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.297 r_dihedral_angle_4_deg 20.225 r_dihedral_angle_3_deg 15.725 r_dihedral_angle_1_deg 6.633 r_scangle_it 6.434 r_scbond_it 4.305 r_mcangle_it 2.386 r_angle_other_deg 1.571 r_angle_refined_deg 1.478 r_mcbond_it 1.262
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.297 r_dihedral_angle_4_deg 20.225 r_dihedral_angle_3_deg 15.725 r_dihedral_angle_1_deg 6.633 r_scangle_it 6.434 r_scbond_it 4.305 r_mcangle_it 2.386 r_angle_other_deg 1.571 r_angle_refined_deg 1.478 r_mcbond_it 1.262 r_mcbond_other 0.435 r_chiral_restr 0.074 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14264 Nucleic Acid Atoms Solvent Atoms 540 Heterogen Atoms 125
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction ADSC data collection XDS data reduction SHELXD phasing autoSHARP phasing