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X-ray structure of Viscotoxin A1 from Viscum album L.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 298 1.4M Sodium citrate, 0.1 M HEPES pH 7.5, vapor diffusion, temperature 298K, pH 7.50
Crystal Properties Matthews coefficient Solvent content 2.6 52.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.73 α = 90 b = 65.73 β = 90 c = 47.16 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD BRUKER SMART 6000 OSMIC FOCUSSING MIRRORS 2004-10-10 M SINGLE WAVELENGTH 2 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2005-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 2 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.25 47.16 100 0.0891 0.031 25.5 1.8 29217 11.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.25 1.35 100 0.3038 0.3038 2.61 1.75
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD FREE R 1.25 47.16 29166 1445 100 0.1498 0.151 0.1485 0.191 RANDOM 17.81
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 1 801.79
RMS Deviations Key Refinement Restraint Deviation s_from_restr_planes 0.36 s_approx_iso_adps 0.108 s_zero_chiral_vol 0.072 s_non_zero_chiral_vol 0.065 s_similar_adp_cmpnt 0.038 s_angle_d 0.028 s_bond_d 0.013 s_anti_bump_dis_restr 0.013 s_rigid_bond_adp_cmpnt 0.004 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 674 Nucleic Acid Atoms Solvent Atoms 135 Heterogen Atoms
Software Software Software Name Purpose SHELX refinement PDB_EXTRACT data extraction SAINT data reduction SADABS data scaling XPREP data reduction SHELXD phasing SHELXE model building SHELXL-97 refinement