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Crystal structure of a putative membrane protein from Corynebacterium diphtheriae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 291 0.05M Calcium chloride dihydrate, 0.1M Bis-Tris, 30% v/v PEG MME 550, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.52 51.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.374 α = 90 b = 99.837 β = 90 c = 124.621 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2007-06-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97940 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 62.26 99.54 0.099 40.13 9.1 22137 22035 2 28.01
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 99.94 0.736 2.31 7.4 1702
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.95 62.26 22035 22035 1193 99.54 0.20185 0.20185 0.20021 0.2024 0.23164 0.2354 RANDOM 27.602
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 -0.48 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.074 r_dihedral_angle_3_deg 14.781 r_dihedral_angle_4_deg 14.743 r_dihedral_angle_1_deg 6.16 r_scangle_it 3.248 r_scbond_it 2.176 r_mcangle_it 1.504 r_angle_refined_deg 1.43 r_mcbond_it 1.289 r_angle_other_deg 0.956
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.074 r_dihedral_angle_3_deg 14.781 r_dihedral_angle_4_deg 14.743 r_dihedral_angle_1_deg 6.16 r_scangle_it 3.248 r_scbond_it 2.176 r_mcangle_it 1.504 r_angle_refined_deg 1.43 r_mcbond_it 1.289 r_angle_other_deg 0.956 r_nbd_refined 0.218 r_mcbond_other 0.214 r_nbd_other 0.2 r_xyhbond_nbd_refined 0.194 r_symmetry_vdw_other 0.194 r_symmetry_vdw_refined 0.173 r_nbtor_refined 0.165 r_symmetry_hbond_refined 0.135 r_xyhbond_nbd_other 0.092 r_nbtor_other 0.088 r_chiral_restr 0.083 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1970 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing