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Structural Insight into the Kinetics and Cp of interactions between TEM-1-Lactamase and BLIP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JTG PDB entry 1JTG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 298 15% PEG 8000, 0.1M Phosphate-Citrate, 0.1M NaCl, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.69 54.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.09 α = 90 b = 129.476 β = 91.86 c = 80.13 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2006-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CAMD BEAMLINE GCPCC 1.3808 CAMD GCPCC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 32.41 0.065 0.065 12.5 3.7 54728 50562 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1JTG 2.2 32.41 79830 47994 2568 99.74 0.20954 0.20833 0.2046 0.23202 0.2278 RANDOM 25.484
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 -0.28 0.13 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.11 r_dihedral_angle_4_deg 16.486 r_dihedral_angle_3_deg 13.816 r_scangle_it 5.614 r_mcangle_it 4.667 r_dihedral_angle_1_deg 4.572 r_scbond_it 3.669 r_mcbond_it 3.099 r_angle_refined_deg 1.926 r_xyhbond_nbd_refined 0.467
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.11 r_dihedral_angle_4_deg 16.486 r_dihedral_angle_3_deg 13.816 r_scangle_it 5.614 r_mcangle_it 4.667 r_dihedral_angle_1_deg 4.572 r_scbond_it 3.669 r_mcbond_it 3.099 r_angle_refined_deg 1.926 r_xyhbond_nbd_refined 0.467 r_symmetry_vdw_refined 0.377 r_nbtor_refined 0.302 r_nbd_refined 0.23 r_symmetry_hbond_refined 0.19 r_chiral_restr 0.137 r_bond_refined_d 0.026 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6512 Nucleic Acid Atoms Solvent Atoms 231 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection MOSFLM data reduction SCALA data scaling MOLREP phasing