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Crystal structure of protein Bsu07140 from Bacillus subtilis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 294 50mM Bis-Tris pH 6.5, 25% Pentaerythriol ethoxylate, 100 mM Ammonium sulfate, 10% Glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.23 44.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.268 α = 90 b = 71.334 β = 111.93 c = 70.094 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD MAR CCD 165 mm 2006-10-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9796 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.21 50 96.1 0.06 5.7 1.8 31443 -0.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.21 2.28 89.2 0.77 0.4 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 20 20786 681 98.86 0.2346 0.23289 0.229 0.28763 0.2834 RANDOM 72.905
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.9 -0.74 0.16 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.759 r_dihedral_angle_3_deg 18.8 r_dihedral_angle_4_deg 15.163 r_scangle_it 10.078 r_scbond_it 7.158 r_mcangle_it 6.469 r_dihedral_angle_1_deg 5.231 r_mcbond_it 4.183 r_angle_refined_deg 1.108 r_nbtor_refined 0.293
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.759 r_dihedral_angle_3_deg 18.8 r_dihedral_angle_4_deg 15.163 r_scangle_it 10.078 r_scbond_it 7.158 r_mcangle_it 6.469 r_dihedral_angle_1_deg 5.231 r_mcbond_it 4.183 r_angle_refined_deg 1.108 r_nbtor_refined 0.293 r_xyhbond_nbd_refined 0.147 r_symmetry_hbond_refined 0.147 r_nbd_refined 0.134 r_symmetry_vdw_refined 0.11 r_chiral_restr 0.08 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4447 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms 6
Software Software Software Name Purpose SHELX model building REFMAC refinement MAR345 data collection HKL-2000 data reduction HKL-2000 data scaling SHELXD phasing