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The pseudo-atomic structure of dengue immature virus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TG8 experimental model PDB 3C5X
Sample DENGUE-2 IMMATURE PARTICLE
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument HOMEMADE PLUNGER Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 2741 Reported Resolution (Å) 12.5 Resolution Method Other Details Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 (1TG8, 3C5X) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target USE PROGRAM EMFIT, SEARCH FOR POSTION WHERE ATOMS OCCUPY MOST EM DENSITY PEAKS Overall B Value Fitting Procedure Details METHOD--SEE PRIMARY CITATION REFINEMENT PROTOCOL--RIGID BODY
Data Acquisition Detector Type KODAK SO-163 FILM Electron Dose (electrons/Å**2) 15
Imaging Experiment 1 Date of Experiment 2008-04-04 Temperature (Kelvin) 100 Microscope Model FEI/PHILIPS CM300FEG/T Minimum Defocus (nm) 1662 Maximum Defocus (nm) 3640 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 45000 Calibrated Magnification 33000 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version MODEL FITTING EMfit RECONSTRUCTION SPIDER RECONSTRUCTION Xmipp